For those that use R to analyze data, a combined file of data encompassing RNA expression, methylation, miRNA, copy number, and mutations is available in Box by clicking the icon below. You must have MDACC credentials to access Box, but you can access from off-site.
Number of unique tumor samples with:
- mRNA Expression: 207
- DNA Methylation: 182
- miRNA Expression: 244
- Copy Number (WES): 214
- Mutation (WES) : 214
Total number of samples with all annotations: 145
Number of samples with all annotations:
- With Loose CMS classification: 123
- 22 cases with mixed CMS phenotype
- With Strict CMS classification: 116
- 29 cases with mixed CMS phenotype
Note: The Integromics Box folder has a more comprehensive set of cases with another 20% of cases.