{"id":74,"date":"2018-10-03T22:27:29","date_gmt":"2018-10-03T22:27:29","guid":{"rendered":"http:\/\/crcmoonshot.org\/?page_id=74"},"modified":"2022-06-24T20:31:13","modified_gmt":"2022-06-24T20:31:13","slug":"integrated-integromics-database-for-r","status":"publish","type":"page","link":"https:\/\/crcmoonshot.org\/?page_id=74","title":{"rendered":"Integrated Integromics Database for R"},"content":{"rendered":"<p>For those that use R to analyze data, a combined file of data encompassing RNA expression, methylation, miRNA, copy number, and mutations is available in Box by clicking the icon below.\u00a0 You must have MDACC credentials to access Sharepoint, but you can access from off-site.\u00a0 Others can request access<\/p>\n<p><a href=\"https:\/\/mdandersonorg-my.sharepoint.com\/personal\/skopetz_mdanderson_org\/_layouts\/15\/guestaccess.aspx?guestaccesstoken=GQSrnmfFWKYnBStf4UpHV8ylfB3zMjwnJXfp4jAHLH8%3D&amp;folderid=2_1d936671dcceb40d096b1a3a8ae2f0131&amp;rev=1&amp;e=FHp9O1\"><img loading=\"lazy\" class=\"alignnone wp-image-50 size-full\" src=\"http:\/\/crcmoonshot.org\/wp-content\/uploads\/secure-access-1.jpeg\" alt=\"\" width=\"372\" height=\"135\" srcset=\"https:\/\/crcmoonshot.org\/wp-content\/uploads\/secure-access-1.jpeg 372w, https:\/\/crcmoonshot.org\/wp-content\/uploads\/secure-access-1-300x109.jpeg 300w\" sizes=\"(max-width: 372px) 100vw, 372px\" \/><\/a><\/p>\n<p>Number of unique tumor samples with:<\/p>\n<ul>\n<li>mRNA Expression: 207<\/li>\n<li>DNA Methylation: 182<\/li>\n<li>miRNA Expression: 244<\/li>\n<li>Copy Number (WES): 214<\/li>\n<li>Mutation (WES) : 214<\/li>\n<\/ul>\n<p>Total number of samples with all annotations: 145<\/p>\n<p>Number of samples with all annotations:<\/p>\n<ul>\n<li>With Loose CMS classification: 123\n<ul>\n<li>22 cases with mixed CMS phenotype<\/li>\n<\/ul>\n<\/li>\n<li>With Strict CMS classification: 116\n<ul>\n<li>29 cases with mixed CMS phenotype<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<p>Note:\u00a0 The Integromics Sharepoint folder has a more comprehensive set of cases with another 20% of cases.<\/p>\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>For those that use R to analyze data, a combined file of data encompassing RNA expression, methylation, miRNA, copy number, and mutations is available in Box by clicking the icon below.\u00a0 You must have MDACC credentials to access Sharepoint, but you can access from off-site.\u00a0 Others can request access Number of unique tumor samples with: &hellip; <a href=\"https:\/\/crcmoonshot.org\/?page_id=74\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">Integrated Integromics Database for R<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":5,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=\/wp\/v2\/pages\/74"}],"collection":[{"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=74"}],"version-history":[{"count":8,"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=\/wp\/v2\/pages\/74\/revisions"}],"predecessor-version":[{"id":226,"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=\/wp\/v2\/pages\/74\/revisions\/226"}],"up":[{"embeddable":true,"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=\/wp\/v2\/pages\/5"}],"wp:attachment":[{"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=74"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}