{"id":63,"date":"2018-09-07T00:06:59","date_gmt":"2018-09-07T00:06:59","guid":{"rendered":"http:\/\/crcmoonshot.org\/?page_id=63"},"modified":"2018-09-07T00:28:10","modified_gmt":"2018-09-07T00:28:10","slug":"dna-sequencing-analysis-by-cms","status":"publish","type":"page","link":"https:\/\/crcmoonshot.org\/?page_id=63","title":{"rendered":"DNA Sequencing Analysis by CMS"},"content":{"rendered":"<p>This provides a link to the analyses performed on the Integromics whole exome sequencing (WES), TCGA WES, and targeted sequencing of Integromics cohort (T200).\u00a0 Nozzle reports are available, including MutCV and Oncotator annotated results.\u00a0 Comparison of mutation frequency by CMS are included, as well as waterfall plots and lollipop plots for summary and individual gene analyses.\u00a0 BAM file locations are listed below.<\/p>\n<p><a href=\"http:\/\/insidebioinfo.mdanderson.edu\/CRC-Moonshot\/reports_CRC_Mutation_Analysis_Reports_2018\/CRC-Mutation-Analysis-Reports\/CRC-Overall-Nozzle-Report.html\"><img loading=\"lazy\" class=\"size-medium wp-image-47 aligncenter\" src=\"http:\/\/crcmoonshot.org\/wp-content\/uploads\/secure-access-300x109.jpeg\" alt=\"\" width=\"300\" height=\"109\" srcset=\"https:\/\/crcmoonshot.org\/wp-content\/uploads\/secure-access-300x109.jpeg 300w, https:\/\/crcmoonshot.org\/wp-content\/uploads\/secure-access.jpeg 372w\" sizes=\"(max-width: 300px) 100vw, 300px\" \/><\/a><\/p>\n<p><a href=\"http:\/\/insidebioinfo.mdanderson.edu\/CRC-Moonshot\/reports_CRC_Mutation_Analysis_Reports_2018\/CRC-Mutation-Analysis-Reports\/CRC-Overall-Nozzle-Report.html\"><img loading=\"lazy\" class=\"wp-image-64 size-large aligncenter\" src=\"http:\/\/crcmoonshot.org\/wp-content\/uploads\/waterfall-sig-genes-CMS1-CMS2-CMS3-CMS4-Unknown-1024x510.png\" alt=\"\" width=\"660\" height=\"329\" srcset=\"https:\/\/crcmoonshot.org\/wp-content\/uploads\/waterfall-sig-genes-CMS1-CMS2-CMS3-CMS4-Unknown-1024x510.png 1024w, https:\/\/crcmoonshot.org\/wp-content\/uploads\/waterfall-sig-genes-CMS1-CMS2-CMS3-CMS4-Unknown-300x150.png 300w, https:\/\/crcmoonshot.org\/wp-content\/uploads\/waterfall-sig-genes-CMS1-CMS2-CMS3-CMS4-Unknown-768x383.png 768w, https:\/\/crcmoonshot.org\/wp-content\/uploads\/waterfall-sig-genes-CMS1-CMS2-CMS3-CMS4-Unknown.png 1844w\" sizes=\"(max-width: 660px) 100vw, 660px\" \/><\/a><\/p>\n<p><strong><u>Sequencing Data:<\/u><\/strong><\/p>\n<p>Following are the locations of BAM files and the corresponding sample information of the exome and the T200.1 data<\/p>\n<p>Whole exome:<\/p>\n<p>\/rsrch1\/bcb\/bmbroom\/MS14\/CRC_MS14\/batch3.<\/p>\n<p>T200.1:<\/p>\n<p>\/rsrch1\/bcb\/bmbroom\/MS14\/CRC_MS14\/batch2<\/p>\n","protected":false},"excerpt":{"rendered":"<p>This provides a link to the analyses performed on the Integromics whole exome sequencing (WES), TCGA WES, and targeted sequencing of Integromics cohort (T200).\u00a0 Nozzle reports are available, including MutCV and Oncotator annotated results.\u00a0 Comparison of mutation frequency by CMS are included, as well as waterfall plots and lollipop plots for summary and individual gene &hellip; <a href=\"https:\/\/crcmoonshot.org\/?page_id=63\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">DNA Sequencing Analysis by CMS<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=\/wp\/v2\/pages\/63"}],"collection":[{"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=63"}],"version-history":[{"count":2,"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=\/wp\/v2\/pages\/63\/revisions"}],"predecessor-version":[{"id":71,"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=\/wp\/v2\/pages\/63\/revisions\/71"}],"wp:attachment":[{"href":"https:\/\/crcmoonshot.org\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=63"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}