RNA Sequencing for PDX samples
Click the link for access to BOX folder for the RNA, with meta data for the samples, and the gencode V23 transcripts/genes used for mapping. There are matrices for counts, and TPMS for both transcripts and collapsed to genes.
DNA Sequencing for PDX samples
Click the link to access to BOX folder for the DNA. This file contains the corresponding .vcf calls from the vendor and the sample ID.
Please contact Scott Kopetz if you require access from external site to the BOX folder. Many thanks to Chris Bristow and Justin Huang for their work on this.
FileMaker database with PDX samples details.
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>300 models with clinical annotation and clinical molecular profile
79 Annotated PDX Models 60 Whole Exome DNA Sequencing 60 RNA Sequencing 50 Reverse Phase Protein Array 40 Methylation