PDX Resources and Profiling

RNA Sequencing for PDX samples

Click the link for access to BOX folder for the RNA, with meta data for the samples, and the gencode V23 transcripts/genes used for mapping. There are matrices for counts, and TPMS for both transcripts and collapsed to genes.

DNA Sequencing for PDX samples

Click the link to access to BOX folder for the DNA. This file contains the corresponding .vcf calls from the vendor and the sample ID.

Many thanks to Chris Bristow and Justin Huang for their work on this.

FileMaker database with PDX samples details. 

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>300 models with clinical annotation and clinical molecular profile

79 Annotated PDX Models

60 Whole Exome DNA Sequencing

60 RNA Sequencing

50 Reverse Phase Protein Array

40 Methylation

Thanks to Camilla and Syed for their maintenance of this database.